spo7 protein (Choanephora cucurbitarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spo7

Sporulation-specific protein spo7. (165 aa)

Predicted Functional Partners:

cnep-1_1

0.889

cnep-1_0

0.889

ned1_0

0.811

ned1_1

0.811

DYR_0

0.805

OLE1_0

0.802

OLE1_1

0.802

DYR_1

0.766

etp1

0.753

MFDX1

0.710

Your Current Organism:

Choanephora cucurbitarum

NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DYR_0	DYR_1	A0A1C7NGR4	A0A1C7N241	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	0.976
DYR_0	MFDX1	A0A1C7NGR4	A0A1C7N7Q8	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Adrenodoxin-like protein 1, mitochondrial.	0.472
DYR_0	etp1	A0A1C7NGR4	A0A1C7N6W2	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Electron transfer protein 1, mitochondrial.	0.545
DYR_0	spo7	A0A1C7NGR4	A0A1C7NBF2	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Sporulation-specific protein spo7.	0.805
DYR_1	DYR_0	A0A1C7N241	A0A1C7NGR4	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	0.976
DYR_1	spo7	A0A1C7N241	A0A1C7NBF2	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	Sporulation-specific protein spo7.	0.766
MFDX1	DYR_0	A0A1C7N7Q8	A0A1C7NGR4	Adrenodoxin-like protein 1, mitochondrial.	Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.	0.472
MFDX1	OLE1_0	A0A1C7N7Q8	A0A1C7N0P6	Adrenodoxin-like protein 1, mitochondrial.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.771
MFDX1	OLE1_1	A0A1C7N7Q8	A0A1C7NCC8	Adrenodoxin-like protein 1, mitochondrial.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.771
MFDX1	etp1	A0A1C7N7Q8	A0A1C7N6W2	Adrenodoxin-like protein 1, mitochondrial.	Electron transfer protein 1, mitochondrial.	0.688
MFDX1	spo7	A0A1C7N7Q8	A0A1C7NBF2	Adrenodoxin-like protein 1, mitochondrial.	Sporulation-specific protein spo7.	0.710
OLE1_0	MFDX1	A0A1C7N0P6	A0A1C7N7Q8	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Adrenodoxin-like protein 1, mitochondrial.	0.771
OLE1_0	OLE1_1	A0A1C7N0P6	A0A1C7NCC8	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.869
OLE1_0	etp1	A0A1C7N0P6	A0A1C7N6W2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Electron transfer protein 1, mitochondrial.	0.831
OLE1_0	spo7	A0A1C7N0P6	A0A1C7NBF2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Sporulation-specific protein spo7.	0.802
OLE1_1	MFDX1	A0A1C7NCC8	A0A1C7N7Q8	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Adrenodoxin-like protein 1, mitochondrial.	0.771
OLE1_1	OLE1_0	A0A1C7NCC8	A0A1C7N0P6	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.869
OLE1_1	etp1	A0A1C7NCC8	A0A1C7N6W2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Electron transfer protein 1, mitochondrial.	0.831
OLE1_1	spo7	A0A1C7NCC8	A0A1C7NBF2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Sporulation-specific protein spo7.	0.802
cnep-1_0	ned1_0	A0A1C7NMW7	A0A1C7N4W4	CTD nuclear envelope phosphatase 1.	Nuclear elongation and deformation protein 1.	0.875