STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mehMesaconyl-C(4)-CoA hydratase. (660 aa)    
Predicted Functional Partners:
FIE2
Polycomb group protein FIE2.
    
 0.820
RBBP5
Retinoblastoma-binding protein 5.
    
 0.803
ash2
Set1 complex component ash2.
    
 0.803
HHT1
Histone H3; Belongs to the histone H3 family.
   
 0.797
H3.1
Histone H3; Belongs to the histone H3 family.
   
 0.797
His2Av
Histone H2A; Belongs to the histone H2A family.
    
 0.734
rrn7
RNA polymerase I-specific transcription initiation factor rrn7.
    
  0.715
dot1
Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.
    
 0.712
RPH1
DNA damage-responsive transcriptional repressor RPH1.
   
 0.709
HTB1_0
Histone H2B; Belongs to the histone H2B family.
 
  
 0.694
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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