STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpb2U2 small nuclear ribonucleoprotein B. (160 aa)    
Predicted Functional Partners:
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.997
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
SmG
Small nuclear ribonucleoprotein G.
   
 0.995
SmF
Small nuclear ribonucleoprotein F.
   
 0.995
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
sap61
Pre-mRNA-splicing factor sap61.
   
 0.992
cwc2
Pre-mRNA-splicing factor cwc2.
    
 0.988
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 
 0.987
BUD31
Protein BUD31.
   
 
 0.985
smd1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.985
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.