STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX41_0Sorting nexin-41. (473 aa)    
Predicted Functional Partners:
SNX4_1
Sorting nexin-4.
    
0.968
SNX4_0
Sorting nexin-4.
    
0.968
vps29
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.774
Vps26b
Vacuolar protein sorting-associated protein 26B.
   
 
 0.745
end4
Endocytosis protein end4.
   
 0.725
VPS35_0
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.704
VPS35_1
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.704
ATG1
Serine/threonine-protein kinase ATG1; Belongs to the protein kinase superfamily.
   
 
 0.695
atg11
Autophagy-related protein 11.
    
 
 0.644
VPS10
Sortilin.
    
 0.643
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.