STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC58_0Leucine-rich repeat-containing protein 58. (611 aa)    
Predicted Functional Partners:
TONSL
Tonsoku-like protein.
    
 0.870
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 0.809
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.804
smd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.803
SmF
Small nuclear ribonucleoprotein F.
    
  0.793
smd1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.792
naa38
N-alpha-acetyltransferase 38, NatC auxiliary subunit.
    
 0.754
U2B
U2 small nuclear ribonucleoprotein B.
    
 0.754
snrpb2
U2 small nuclear ribonucleoprotein B.
    
 0.754
SNRNP65
U11/U12 small nuclear ribonucleoprotein.
    
 0.754
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.