STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_04393RNF220 domain-containing protein. (390 aa)    
Predicted Functional Partners:
NIA1
Nitrate reductase [NADH] 1.
    
  0.769
TONSL
Tonsoku-like protein.
    
 0.684
LAMTOR2
Ragulator complex protein LAMTOR2.
    
 0.611
rpsK
30S ribosomal protein S11.
    
  0.608
mrp4
37S ribosomal protein mrp4, mitochondrial.
   
  0.608
MRPS28
37S ribosomal protein S28, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
   
  0.607
mrps16
Putative 37S ribosomal protein S16, mitochondrial.
   
  0.606
mrp-9
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
    
  0.605
mRpS6
Putative 28S ribosomal protein S6, mitochondrial.
    
  0.605
MRP2
37S ribosomal protein MRP2, mitochondrial.
    
  0.603
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.