STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec18Vesicular-fusion protein sec18; Belongs to the AAA ATPase family. (622 aa)    
Predicted Functional Partners:
sly1
Protein sly1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.983
Snap
Soluble NSF attachment protein.
   
 0.975
Napa
Alpha-soluble NSF attachment protein.
   
 0.975
sec9
Protein transport protein sec9.
   
 
 0.965
snpC
Gamma-soluble NSF attachment protein.
   
 0.964
A0J61_07898
Uncharacterized protein.
   
 0.954
psy1_0
Syntaxin-like protein psy1.
    
 0.953
psy1_2
Syntaxin-like protein psy1.
    
 0.953
psy1_1
Syntaxin-like protein psy1.
    
 0.942
SYP22_1
Syntaxin-22.
   
 0.942
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.