STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grhl2Grainyhead-like protein 2. (540 aa)    
Predicted Functional Partners:
MTF2
Metal-response element-binding transcription factor 2.
    
  0.592
GMCL1P1
Putative germ cell-less protein.
    
  0.529
tbp1
TATA-box-binding protein.
    
  0.529
A0J61_08262
Uncharacterized protein.
    
  0.529
A0J61_08223
Uncharacterized protein.
    
  0.529
A0J61_05339
GLTSCR1 domain-containing protein.
    
  0.529
Smarca1
Putative global transcription activator SNF2L1.
   
  0.427
nol6
U3 small nucleolar RNA-associated protein 22.
   
 
  0.418
mit1
Chromatin remodeling factor mit1.
    
 0.413
taf2
Transcription initiation factor TFIID subunit 2.
   
   0.403
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.