STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMC7Armadillo repeat-containing protein 7. (148 aa)    
Predicted Functional Partners:
rbm48
RNA-binding protein 48.
  
 
 
 0.974
CWC22
Pre-mRNA-splicing factor CWC22.
    
   0.858
clf1
Pre-mRNA-splicing factor clf1.
    
   0.858
DDL
FHA domain-containing protein DDL.
    
   0.858
cript
Cysteine-rich PDZ-binding protein.
    
 
 0.858
cdc28
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28.
    
   0.858
Snrnp40
U5 small nuclear ribonucleoprotein.
    
   0.858
cwc27
Peptidyl-prolyl isomerase cwc27.
    
   0.858
Phf5a
PHD finger-like domain-containing protein 5A.
    
   0.858
prp5_0
Pre-mRNA-splicing factor prp5.
    
   0.858
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.