STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_02790bVLRF1 domain-containing protein. (615 aa)    
Predicted Functional Partners:
vcp
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.860
A0J61_04039
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 
 0.860
tif6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.846
afg2
ATPase family gene 2 protein.
   
 
 0.758
Spata5
Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.
   
 
 0.758
A0J61_09727
Uncharacterized protein.
   
 
 0.755
ufd2
Ubiquitin conjugation factor E4.
    
 
 0.691
vat
VCP-like ATPase; Belongs to the AAA ATPase family.
   
 
 0.684
A0J61_04363
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 
 0.684
RpL32_0
60S ribosomal protein L32.
    
   0.661
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.