STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
INO80Putative DNA helicase INO80. (1501 aa)    
Predicted Functional Partners:
A0J61_08851
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.990
ruvbl1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.990
arp5
Actin-like protein arp5; Belongs to the actin family.
    
 0.981
ruvbl2
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.973
ies6
Chromatin-remodeling complex subunit ies6.
    
 0.959
ACTL6A_0
Actin-like protein 6A; Belongs to the actin family.
    
 0.956
ACTL6A_1
Actin-like protein 6A; Belongs to the actin family.
    
 0.956
NHP10_0
Non-histone protein 10.
    
 0.931
NHP10_1
Non-histone protein 10.
    
 0.931
Ino80b_1
INO80 complex subunit B.
    
  0.918
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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