STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_04001Putative RING finger protein C4G3.12c. (408 aa)    
Predicted Functional Partners:
rrn7
RNA polymerase I-specific transcription initiation factor rrn7.
    
 0.828
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.801
sde2
Protein SDE2.
    
 0.784
TMC1
AN1-type zinc finger protein TMC1.
    
 0.784
KEX1_0
Protease KEX1.
    
  0.756
KEX1_2
Protease KEX1; Belongs to the peptidase S8 family.
    
  0.756
spm2
Ubiquitin-conjugating enzyme spm2.
   
  0.680
A0J61_08869
Ubiquitin-like domain-containing protein.
    
 0.609
rhp23
UV excision repair protein rhp23.
    
 0.609
DSK2
Ubiquitin domain-containing protein DSK2.
    
 0.609
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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