STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SWR1Helicase SWR1. (1467 aa)    
Predicted Functional Partners:
ruvbl1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.996
ruvbl2
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.996
His2Av
Histone H2A; Belongs to the histone H2A family.
    
 0.993
VPS72
Vacuolar protein sorting-associated protein 72.
    
 0.988
swc4
SWR1-complex protein 4.
   
 0.988
YAF9
Protein AF-9.
    
 0.984
ARP6
Actin-like protein ARP6; Belongs to the actin family.
    
 
 0.984
vps71_1
SWR1 complex subunit vps71.
    
 
 0.983
ACTL6A_0
Actin-like protein 6A; Belongs to the actin family.
    
 0.969
ACTL6A_1
Actin-like protein 6A; Belongs to the actin family.
    
 0.969
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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