STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_01671WD_REPEATS_REGION domain-containing protein. (462 aa)    
Predicted Functional Partners:
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.957
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.955
PRPF6
Pre-mRNA-processing factor 6.
   
 0.953
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.950
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.950
SmF
Small nuclear ribonucleoprotein F.
   
  0.945
SNRNP200
U5 small nuclear ribonucleoprotein helicase.
   
 0.945
DDX23
Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
    
 0.943
smd1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.940
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.926
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.