STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUDT3Nudix hydrolase 3. (534 aa)    
Predicted Functional Partners:
mrp20
54S ribosomal protein L23, mitochondrial.
   
 
 0.891
RPL3B
50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
   0.875
rplS
50S ribosomal protein L19.
   
 
 0.860
mrpl16_1
54S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.855
MRPS28
37S ribosomal protein S28, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
   
   0.854
MRPL24
54S ribosomal protein L24, mitochondrial.
   
 
 0.853
rplD
50S ribosomal protein L4.
   
 
 0.852
mrpl22
54S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.852
mrpl10
54S ribosomal protein L10, mitochondrial.
   
   0.846
MRPL23
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.844
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.