STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab3il1Guanine nucleotide exchange factor for Rab-3A. (450 aa)    
Predicted Functional Partners:
nca2
Nuclear control of ATPase protein 2.
    
 0.857
rab8A
Ras-related protein Rab-8A.
    
 0.857
Rab11a_1
Ras-related protein Rab-11A.
    
 0.827
YPT3
Ras-related protein YPT3.
    
 0.827
RAB11A
Ras-related protein Rab-11A.
    
 0.827
EXOC6B
Exocyst complex component 6B.
    
 0.807
Exoc6b
Exocyst complex component 6B.
    
 0.807
17E5.300_1
Putative Ras-related protein Rab7.
    
 0.799
A0J61_00947
Uncharacterized protein.
    
 0.799
17E5.300_0
Putative Ras-related protein Rab7.
    
 0.799
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.