STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCL1_5PHO85 cyclin-1. (191 aa)    
Predicted Functional Partners:
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.913
GDE1
Glycerophosphodiester phosphodiesterase GDE1.
    
 0.818
ku80
ATP-dependent DNA helicase II subunit 2.
    
 0.757
LIG4
DNA ligase 4; Belongs to the ATP-dependent DNA ligase family.
    
 0.734
ku70
ATP-dependent DNA helicase II subunit 1.
    
 0.700
cdc17
DNA ligase.
    
 0.649
pso2
DNA cross-link repair protein pso2/snm1.
   
 
 0.492
tor2
Phosphatidylinositol 3-kinase tor2; Belongs to the PI3/PI4-kinase family.
    
 0.480
rrp6
Exosome complex exonuclease rrp6.
    
 0.480
SMG1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 0.480
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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