STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF19Pre-mRNA-processing factor 19. (500 aa)    
Predicted Functional Partners:
Isy1
Pre-mRNA-splicing factor ISY1.
    
 0.999
syf1
Pre-mRNA-splicing factor syf1.
   
 0.999
AQR
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
 0.999
bcas2
Pre-mRNA-splicing factor SPF27.
   
 0.999
prp5_0
Pre-mRNA-splicing factor prp5.
   
0.999
cwc15-a
Protein CWC15 A.
    
 0.999
cyp10
Peptidyl-prolyl cis-trans isomerase E.
    
 0.999
cef-1
Pre-mRNA-splicing factor cef-1.
   
 0.999
CTNNBL1
Beta-catenin-like protein 1.
   
 0.995
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.993
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.