STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam207aFamily with sequence similarity 207, member A. (219 aa)    
Predicted Functional Partners:
Bysl
Bystin; Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
   
 0.865
Ltv1
Protein LTV1 homolog; Belongs to the LTV1 family.
   
 0.834
Rrp12
Ribosomal RNA-processing 12 homolog.
    
 
 0.806
Tsr1
TSR1, ribosome maturation factor.
    
 0.743
Nob1
RNA-binding protein NOB1; May play a role in mRNA degradation (By similarity). Endonuclease required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits (By similarity).
   
 0.728
D3ZGS7_RAT
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.727
Fau
Ubiquitin-like protein FUBI.
    
   0.727
LOC687780
Ubiquitin-like protein fubi and ribosomal protein S30-like.
    
   0.727
LOC687780-2
FAU, ubiquitin like and ribosomal protein S30 fusion.
    
   0.727
Bud23
BUD23, rRNA methyltransferase and ribosome maturation factor.
   
   0.721
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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