STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc42Coiled-coil domain containing 42 (Predicted). (316 aa)    
Predicted Functional Partners:
Odf1
Outer dense fiber protein 1; Component of the outer dense fibers (ODF) of spermatozoa. ODF are filamentous structures located on the outside of the axoneme in the midpiece and principal piece of the mammalian sperm tail and may help to maintain the passive elastic structures and elastic recoil of the sperm tail.
   
  
 0.792
Sun5
Sad1 and UNC84 domain-containing 5.
   
  
 0.713
Ccdc70
Coiled-coil domain containing 70.
   
  
 0.695
Rimbp3
RIMS-binding protein 3.
   
  
 0.684
Ccdc96
Coiled-coil domain-containing 96.
   
  
 0.651
Ccdc113
Coiled-coil domain-containing 113.
  
  
 0.651
Ccdc181
Coiled-coil domain-containing protein 181; Microtubule-binding protein that localizes to the microtubular manchette of elongating spermatids.
      
 0.633
Ccdc38
Coiled-coil domain-containing 38.
      
 0.631
Ccdc125
Coiled-coil domain-containing 125.
      
 0.622
rnf141
RING finger protein 141; May be involved in spermatogenesis.
      
 0.610
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.