STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abca8aATP-binding cassette, subfamily A (ABC1), member 8a. (1624 aa)    
Predicted Functional Partners:
Abca8
ATP-binding cassette subfamily A member 8.
  
0.937
Prr11
Similar to RIKEN cDNA B930067F20 gene (Predicted).
    
 
 0.670
Abca13
ATP-binding cassette subfamily A member 13.
    
 
0.599
Abca6
ATP-binding cassette subfamily A member 6.
  
 
0.571
Slc17a4
Solute carrier family 17, member 4.
      
 0.541
Abcf3
ATP-binding cassette sub-family F member 3; Displays an antiviral effect against flaviviruses such as west Nile virus (WNV) in the presence of OAS1B.
    
 
 0.464
Abcd4
ATP-binding cassette subfamily D member 4.
      
 0.453
Prxl2c
Similar to UPF0308 protein C9orf21, isoform CRA_a.
      
 0.420
Aadacl3
Arylacetamide deacetylase-like 3.
      
 0.412
Slc5a6
Sodium-dependent multivitamin transporter; Transports pantothenate, biotin and lipoate in the presence of sodium; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.407
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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