Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Utp20UTP20 small subunit processome component. (2788 aa)    
Predicted Functional Partners:
Heatr1
HEAT repeat-containing protein 1.
   
 0.998
Pdcd11
Programmed cell death 11.
   
 0.996
Tbl3
Transducin beta-like protein 3.
   
 0.995
Pwp2
PWP2, small subunit processome component.
   
 0.992
Nop14
Similar to 2610033H07Rik protein (Predicted), isoform CRA_b.
   
 0.992
LOC688637
WD repeat domain 36.
   
 0.988
Bms1
BMS1 ribosome biogenesis factor.
   
 
 0.986
Utp3
Something about silencing protein 10; Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain (By similarity).
   
 0.985
Wdr75
WD repeat domain 75, isoform CRA_a.
   
 0.984
Wdr3
WD repeat domain 3 (Predicted), isoform CRA_c.
   
 0.983
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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