STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc90bCoiled-coil domain-containing protein 90B, mitochondrial; Belongs to the CCDC90 family. (256 aa)    
Predicted Functional Partners:
Fam32a
Protein FAM32A; May induce G2 arrest and apoptosis. May also increase cell sensitivity to apoptotic stimuli; Belongs to the FAM32 family.
   
  
 0.838
Nipal2
Similar to RIKEN cDNA 9330161F08 (Predicted), isoform CRA_a.
   
  
 0.772
LOC103692169
Mitochondrial ribosomal protein L53 (Predicted).
      
 0.747
Mrpl53
Mitochondrial ribosomal protein L53.
      
 0.747
Dus1l
tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the Dus family. Dus1 subfamily.
      
 0.696
Wdr74
RCG47471, isoform CRA_a.
   
  
 0.693
Ier5l
Immediate early response gene 5-like protein; Belongs to the IER family.
      
 0.620
Iqgap3
IQ motif-containing GTPase-activating protein 3.
      
 0.594
Lrrc66
Leucine-rich repeat-containing protein 66.
      
 0.579
Nfyc
Nuclear transcription factor Y subunit gamma; Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors.
      
 0.522
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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