STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lad1Ladinin-1; Anchoring filament protein which is a component of the basement membrane zone. (519 aa)    
Predicted Functional Partners:
Dazap1
DAZ associated protein 1, isoform CRA_a.
    
 
 0.539
Tmem154
Similar to RIKEN cDNA 9930117H01 gene (Predicted), isoform CRA_b.
   
  
 0.509
Ehf
Ets homologous factor (Predicted), isoform CRA_b.
   
  
 0.490
Ociad2
OCIA domain-containing 2.
      
 0.463
Agr2
Anterior gradient 2 (Xenopus laevis) (Predicted), isoform CRA_a.
   
  
 0.442
Wwc1
WW and C2 domain-containing 1.
      
 0.434
Igfbp7
Insulin-like growth factor binding protein 7, isoform CRA_b.
   
  
 0.431
Slfn13
Schlafen family member 13; Endoribonuclease that cleaves tRNAs and rRNAs. Cleaves tRNAs 11 nucleotides from the 3'-terminus at the acceptor stem. Does not act on tRNA(Sec) ; Belongs to the Schlafen family. Subgroup III subfamily.
      
 0.422
Rab25
RAB25, member RAS oncogene family (Predicted), isoform CRA_b.
   
  
 0.420
Prokr2
Prokineticin receptor 2; Receptor for prokineticin 2. Exclusively coupled to the G(q) subclass of heteromeric G proteins. Activation leads to mobilization of calcium, stimulation of phosphoinositide turnover and activation of p44/p42 mitogen-activated protein kinase (By similarity).
      
 0.414
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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