Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Fancm | Hfm1 | ENSRNOP00000074177 | ENSRNOP00000034409 | FA complementation group M. | Helicase for meiosis 1. | 0.522 |
Fancm | Mlh1 | ENSRNOP00000074177 | ENSRNOP00000072285 | FA complementation group M. | DNA mismatch repair protein Mlh1; Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (MSH2-MSH3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing t [...] | 0.680 |
Fancm | Mlh3 | ENSRNOP00000074177 | ENSRNOP00000038334 | FA complementation group M. | MutL homolog 3 (E. coli) (Predicted), isoform CRA_a. | 0.570 |
Fancm | Msh4 | ENSRNOP00000074177 | ENSRNOP00000014106 | FA complementation group M. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.890 |
Fancm | Msh5 | ENSRNOP00000074177 | ENSRNOP00000057489 | FA complementation group M. | MutS protein homolog 5; Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity); Belongs to the DNA mismatch repair MutS family. | 0.790 |
Fancm | Mus81 | ENSRNOP00000074177 | ENSRNOP00000028015 | FA complementation group M. | Crossover junction endonuclease MUS81; Interacts with EME1 and EME2 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, replication forks and nicked Holliday junctions. May be required in mitosis for the processing of stalled or collapsed replication forks (By similarity); Belongs to the XPF family. | 0.997 |
Fancm | Pms1 | ENSRNOP00000074177 | ENSRNOP00000047584 | FA complementation group M. | PMS1 homolog 1, mismatch repair system component. | 0.523 |
Fancm | Pms2 | ENSRNOP00000074177 | ENSRNOP00000069740 | FA complementation group M. | PMS1 homolog 2, mismatch repair system component. | 0.550 |
Fancm | Rnf212 | ENSRNOP00000074177 | ENSRNOP00000070745 | FA complementation group M. | Ring finger protein 212. | 0.522 |
Fancm | Spo11 | ENSRNOP00000074177 | ENSRNOP00000075147 | FA complementation group M. | SPO11, initiator of meiotic double stranded breaks. | 0.785 |
Hfm1 | Fancm | ENSRNOP00000034409 | ENSRNOP00000074177 | Helicase for meiosis 1. | FA complementation group M. | 0.522 |
Hfm1 | Mlh1 | ENSRNOP00000034409 | ENSRNOP00000072285 | Helicase for meiosis 1. | DNA mismatch repair protein Mlh1; Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (MSH2-MSH3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing t [...] | 0.642 |
Hfm1 | Mlh3 | ENSRNOP00000034409 | ENSRNOP00000038334 | Helicase for meiosis 1. | MutL homolog 3 (E. coli) (Predicted), isoform CRA_a. | 0.725 |
Hfm1 | Msh4 | ENSRNOP00000034409 | ENSRNOP00000014106 | Helicase for meiosis 1. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.883 |
Hfm1 | Msh5 | ENSRNOP00000034409 | ENSRNOP00000057489 | Helicase for meiosis 1. | MutS protein homolog 5; Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity); Belongs to the DNA mismatch repair MutS family. | 0.809 |
Hfm1 | Mus81 | ENSRNOP00000034409 | ENSRNOP00000028015 | Helicase for meiosis 1. | Crossover junction endonuclease MUS81; Interacts with EME1 and EME2 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, replication forks and nicked Holliday junctions. May be required in mitosis for the processing of stalled or collapsed replication forks (By similarity); Belongs to the XPF family. | 0.674 |
Hfm1 | Pms1 | ENSRNOP00000034409 | ENSRNOP00000047584 | Helicase for meiosis 1. | PMS1 homolog 1, mismatch repair system component. | 0.462 |
Hfm1 | Rnf212 | ENSRNOP00000034409 | ENSRNOP00000070745 | Helicase for meiosis 1. | Ring finger protein 212. | 0.641 |
Hfm1 | Spo11 | ENSRNOP00000034409 | ENSRNOP00000075147 | Helicase for meiosis 1. | SPO11, initiator of meiotic double stranded breaks. | 0.628 |
Mlh1 | Fancm | ENSRNOP00000072285 | ENSRNOP00000074177 | DNA mismatch repair protein Mlh1; Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (MSH2-MSH3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing t [...] | FA complementation group M. | 0.680 |
page 1 of 6