STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC680700Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (221 aa)    
Predicted Functional Partners:
D3ZGS7_RAT
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.984
LOC687780
Ubiquitin-like protein fubi and ribosomal protein S30-like.
   
 
 0.984
LOC687780-2
FAU, ubiquitin like and ribosomal protein S30 fusion.
   
 
 0.984
Fau
Ubiquitin-like protein FUBI.
   
 
 0.983
RGD1560821
Similar to small nuclear ribonucleoparticle-associated protein.
   
 
 0.952
M0RCY2_RAT
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.948
Rps5
40S ribosomal protein S5, N-terminally processed; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.946
Rpl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.942
LOC100365839
40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3.
   
 
 0.939
Rpl18
60S ribosomal protein L18; Component of the large ribosomal subunit.
   
 
 0.934
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.