STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fank1Fibronectin type 3 and ankyrin repeat domains 1 protein; Through the activation of JUN and AP-1-mediated transcription, may regulate apoptosis. (344 aa)    
Predicted Functional Partners:
Enkur
Enkurin, TRPC channel-interacting protein.
   
 
 0.726
Spata4
Spermatogenesis-associated 4.
   
 
 0.692
Lrriq1
Leucine-rich repeats and IQ motif-containing 1.
   
 
 0.681
Ccdc113
Coiled-coil domain-containing 113.
   
  
 0.657
Fndc9
Fibronectin type III domain-containing 9.
      
 0.652
LOC100911585
Leucine rich repeat containing 23.
   
 
 0.642
Lrrc23
Leucine rich repeat containing 23, isoform CRA_a.
   
 
 0.640
Cfap52
Cilia and flagella-associated protein 52.
   
 
 0.619
Fndc7
Similar to RIKEN cDNA E230011A21 gene (Predicted), isoform CRA_a.
      
 0.611
Cfap70
Cilia and flagella-associated protein 70.
   
 
 0.604
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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