STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slc6a7Sodium-dependent proline transporter; Terminates the action of proline by its high affinity sodium- dependent reuptake into presynaptic terminals. (660 aa)    
Predicted Functional Partners:
RGD1560723
Uncharacterized protein.
      
 0.790
LOC100359583
Prothymosin alpha.
      
 0.761
Ptma
Prothymosin alpha, N-terminally processed; Prothymosin alpha may mediate immune function by conferring resistance to certain opportunistic infections; Belongs to the pro/parathymosin family.
      
 0.760
Helt
Helt bHLH transcription factor.
      
 0.651
Slc35f1
Solute carrier family 35, member F1.
   
  
 0.569
Slc35f4
Solute carrier family 35, member F4.
   
  
 0.551
Slc35g2
Solute carrier family 35 member G2.
   
  
 0.549
Mfsd14b
Hippocampus abundant transcript-like protein 1.
      
 0.532
Ppfibp1
PPFIA-binding protein 1.
   
  
 0.488
RGD1563354
Similar to hypothetical protein D630003M21.
      
 0.487
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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