STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp32Ubiquitin-specific peptidase 32; Belongs to the peptidase C19 family. (1640 aa)    
Predicted Functional Partners:
Appbp2
Amyloid protein-binding protein 2; May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface (By similarity).
   
  
 0.589
Herc2
HECT and RLD domain-containing E3 ubiquitin protein ligase 2.
   
 
 0.573
Trim45
Tripartite motif protein 45 (Predicted), isoform CRA_b.
    
 
 0.564
Zkscan2
Zinc finger with KRAB and SCAN domains 2.
      
 0.535
RT1-M6-2
RT1 class I, locus M6, gene 2; Belongs to the MHC class I family.
      
 0.535
Ypel5
Protein yippee-like; Belongs to the yippee family.
   
  
 0.525
Tmem167a
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.523
Mfsd12
Major facilitator superfamily domain-containing 12.
   
  
 0.507
Ranbp2
RAN-binding protein 2.
   
 
 0.505
Exosc2
Exosome component 2 (Predicted).
      
 0.500
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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