STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcn1Von Ebner gland protein 1; Could play a role in taste reception. Could be necessary for the concentration and delivery of sapid molecules in the gustatory system. (177 aa)    
Predicted Functional Partners:
Lcn12
Epididymal-specific lipocalin-12; Binds all-trans retinoic acid and may act as a retinoid carrier protein within the epididymis. May play a role in male fertility.
   
 
 0.734
RGD1306474
Similar to RIKEN cDNA 9530003J23 (Predicted), isoform CRA_a; Belongs to the glycosyl hydrolase 22 family.
   
  
 0.661
Lyzl1
Lysozyme-like 1 (Predicted); Belongs to the glycosyl hydrolase 22 family.
   
  
 0.642
C8g
Complement component 8, gamma polypeptide (Predicted), isoform CRA_a.
   
  
 0.641
Lcn6
Epididymal-specific lipocalin ELP16; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.636
Surf6
Surfeit 6.
      
 0.614
Apod
Apolipoprotein D; APOD occurs in the macromolecular complex with lecithin- transport and binding of bilin. Appears to be able to transport a variety of ligands in a number of different contexts; Belongs to the calycin superfamily. Lipocalin family.
   
 
 0.612
Spaca3
Sperm acrosome associated 3 (Predicted); Belongs to the glycosyl hydrolase 22 family.
   
  
 0.602
Lcn8
Lipocalin 8 (Predicted); Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.598
Vegp2
Von Ebner gland protein 2; Could play a role in taste reception. Could be necessary for the concentration and delivery of sapid molecules in the gustatory system.
  
 
0.570
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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