STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam71e1Family with sequence similarity 71, member E1. (206 aa)    
Predicted Functional Partners:
Rab2b
RAB2B, member RAS oncogene family.
      
 0.592
LOC690206
Hypothetical protein LOC690206.
   
  
 0.581
RGD1307537
Uncharacterized protein C6orf201 homolog.
      
 0.569
RGD1562229
Similar to hypothetical protein FLJ40298.
      
 0.565
LOC691189
Hypothetical protein LOC691189.
      
 0.548
Fam209
Family with sequence similarity 209 member B.
      
 0.548
RGD1309139
Similar to CG5435-PA (Predicted).
      
 0.548
Morn5
MORN repeat-containing 5.
      
 0.546
Ccer1
Coiled-coil domain-containing glutamate-rich protein 1.
      
 0.519
Clip4
CAP-Gly domain-containing linker protein 4.
      
 0.418
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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