STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc60Coiled-coil domain-containing protein 60. (543 aa)    
Predicted Functional Partners:
Glod4
Glyoxalase domain-containing protein 4; Belongs to the glyoxalase I family.
      
 0.647
Tryx5
Trypsin X5; Belongs to the peptidase S1 family.
   
  
 0.574
Fam178b
Family with sequence similarity 178, member B.
   
  
 0.532
Lca5l
Lebercilin LCA5-like.
   
  
 0.504
Ammecr1
AMMECR nuclear protein 1.
      
 0.504
Frmpd2
Uncharacterized protein.
      
 0.497
Ak9
Adenylate kinase 9.
   
  
 0.496
Ikzf3
Zinc finger protein, subfamily 1A, 3 (Aiolos) (Predicted), isoform CRA_a.
      
 0.479
Eps8l2
Eps8l2 protein.
      
 0.475
Sytl1
Synaptotagmin-like 1.
      
 0.475
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.