Col20a1 protein (Rattus norvegicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rattus norvegicus

NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col20a1	Col24a1	ENSRNOP00000049790	ENSRNOP00000019210	Collagen type XX alpha 1 chain.	Collagen type XXIV alpha 1 chain.	0.592
Col20a1	Col26a1	ENSRNOP00000049790	ENSRNOP00000056286	Collagen type XX alpha 1 chain.	Collagen type XXVI alpha 1 chain.	0.609
Col20a1	Col27a1	ENSRNOP00000049790	ENSRNOP00000010333	Collagen type XX alpha 1 chain.	Collagen alpha-1(XXVII) chain; Plays a role during the calcification of cartilage and the transition of cartilage to bone.	0.583
Col20a1	Col5a1	ENSRNOP00000049790	ENSRNOP00000012334	Collagen type XX alpha 1 chain.	Collagen alpha-1(V) chain; Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin (By similarity).	0.563
Col20a1	Col6a2	ENSRNOP00000049790	ENSRNOP00000001695	Collagen type XX alpha 1 chain.	Procollagen, type VI, alpha 2, isoform CRA_a.	0.609
Col20a1	LOC103693323	ENSRNOP00000049790	ENSRNOP00000062298	Collagen type XX alpha 1 chain.	Collagen alpha-1(XXIII) chain.	0.598
Col20a1	Nfxl1	ENSRNOP00000049790	ENSRNOP00000074217	Collagen type XX alpha 1 chain.	Nuclear transcription factor, X-box-binding-like 1.	0.738
Col20a1	P3h1	ENSRNOP00000049790	ENSRNOP00000071755	Collagen type XX alpha 1 chain.	Prolyl 3-hydroxylase 1; Basement membrane-associated chondroitin sulfate proteoglycan (CSPG). Has prolyl 3-hydroxylase activity catalyzing the post- translational formation of 3-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens, especially types IV and V. May be involved in the secretory pathway of cells. Has growth suppressive activity in fibroblasts (By similarity).	0.587
Col20a1	Serpinh1	ENSRNOP00000049790	ENSRNOP00000022983	Collagen type XX alpha 1 chain.	Serpin H1; Binds specifically to collagen. Could be involved as a chaperone in the biosynthetic pathway of collagen.	0.658
Col20a1	Slc35c2	ENSRNOP00000049790	ENSRNOP00000025238	Collagen type XX alpha 1 chain.	Solute carrier family 35, member C2, isoform CRA_b.	0.702
Col24a1	Col20a1	ENSRNOP00000019210	ENSRNOP00000049790	Collagen type XXIV alpha 1 chain.	Collagen type XX alpha 1 chain.	0.592
Col24a1	Col26a1	ENSRNOP00000019210	ENSRNOP00000056286	Collagen type XXIV alpha 1 chain.	Collagen type XXVI alpha 1 chain.	0.693
Col24a1	Col27a1	ENSRNOP00000019210	ENSRNOP00000010333	Collagen type XXIV alpha 1 chain.	Collagen alpha-1(XXVII) chain; Plays a role during the calcification of cartilage and the transition of cartilage to bone.	0.449
Col24a1	Col5a1	ENSRNOP00000019210	ENSRNOP00000012334	Collagen type XXIV alpha 1 chain.	Collagen alpha-1(V) chain; Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin (By similarity).	0.695
Col24a1	Col6a2	ENSRNOP00000019210	ENSRNOP00000001695	Collagen type XXIV alpha 1 chain.	Procollagen, type VI, alpha 2, isoform CRA_a.	0.668
Col24a1	LOC103693323	ENSRNOP00000019210	ENSRNOP00000062298	Collagen type XXIV alpha 1 chain.	Collagen alpha-1(XXIII) chain.	0.622
Col24a1	P3h1	ENSRNOP00000019210	ENSRNOP00000071755	Collagen type XXIV alpha 1 chain.	Prolyl 3-hydroxylase 1; Basement membrane-associated chondroitin sulfate proteoglycan (CSPG). Has prolyl 3-hydroxylase activity catalyzing the post- translational formation of 3-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens, especially types IV and V. May be involved in the secretory pathway of cells. Has growth suppressive activity in fibroblasts (By similarity).	0.567
Col24a1	Serpinh1	ENSRNOP00000019210	ENSRNOP00000022983	Collagen type XXIV alpha 1 chain.	Serpin H1; Binds specifically to collagen. Could be involved as a chaperone in the biosynthetic pathway of collagen.	0.601
Col26a1	Col20a1	ENSRNOP00000056286	ENSRNOP00000049790	Collagen type XXVI alpha 1 chain.	Collagen type XX alpha 1 chain.	0.609
Col26a1	Col24a1	ENSRNOP00000056286	ENSRNOP00000019210	Collagen type XXVI alpha 1 chain.	Collagen type XXIV alpha 1 chain.	0.693

page 1 of 4

Server load: low (14%) [HD]

Share

Network

Fusion

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Neighborhood

© STRING Consortium 2026

Credits

Access

Info

About