STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zranb2Zinc finger Ran-binding domain-containing protein 2; Splice factor required for alternative splicing of TRA2B/SFRS10 transcripts. May interfere with constitutive 5'-splice site selection (By similarity). (332 aa)    
Predicted Functional Partners:
Ube3a
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
   
  
 0.702
Snrnp70
U1 small nuclear ribonucleoprotein polypeptide A (Predicted), isoform CRA_c.
   
 
 0.621
Fosb
FosB proto-oncogene, AP-1 transcription factor subunit.
   
  
 0.568
Swt1
Similar to RIKEN cDNA 1200016B10 (Predicted), isoform CRA_a.
   
  
 0.555
Zfp646
Zinc finger protein 646.
      
 0.532
Mageb5
MAGE family member B5.
   
  
 0.531
Zfr2
Zinc finger RNA-binding protein 2.
   
 
 0.519
Eif4h
Eukaryotic translation initiation factor 4H; Stimulates the RNA helicase activity of EIF4A in the translation initiation complex. Binds weakly mRNA (By similarity).
   
 
 0.514
Fmr1nb
Fragile X mental retardation 1 neighbor protein-like.
      
 0.510
Triml2
Tripartite motif family-like 2.
      
 0.501
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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