Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| F1M227_RAT | M0R6B6_RAT | ENSRNOP00000037442 | ENSRNOP00000064963 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | UBIQUITIN_CONJUGAT_2 domain-containing protein. | 0.759 |
| F1M227_RAT | Uba52 | ENSRNOP00000037442 | ENSRNOP00000027073 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | 0.974 |
| F1M227_RAT | Ube2v1 | ENSRNOP00000037442 | ENSRNOP00000036667 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-conjugating enzyme E2 V1. | 0.711 |
| Fancl | M0R6B6_RAT | ENSRNOP00000036801 | ENSRNOP00000064963 | FA complementation group L. | UBIQUITIN_CONJUGAT_2 domain-containing protein. | 0.664 |
| Fancl | Trip12 | ENSRNOP00000036801 | ENSRNOP00000068991 | FA complementation group L. | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | 0.546 |
| Fancl | Uba52 | ENSRNOP00000036801 | ENSRNOP00000027073 | FA complementation group L. | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | 0.499 |
| M0R6B6_RAT | F1M227_RAT | ENSRNOP00000064963 | ENSRNOP00000037442 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | UBIQUITIN_CONJUGAT_2 domain-containing protein. | 0.759 |
| M0R6B6_RAT | Fancl | ENSRNOP00000064963 | ENSRNOP00000036801 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | FA complementation group L. | 0.664 |
| M0R6B6_RAT | Trip12 | ENSRNOP00000064963 | ENSRNOP00000068991 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | 0.806 |
| M0R6B6_RAT | Uba1 | ENSRNOP00000064963 | ENSRNOP00000033950 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-like modifier-activating enzyme 1; Catalyzes the first step in ubiquitin conjugation to mark cellular proteins for degradation through the ubiquitin-proteasome system. Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding a ubiquitin-E1 thioester and free AMP. Essential for the formation of radiation-induced foci, timely DNA repair and for response to replication stress. Promotes the recruitment of TP53BP1 and BRCA1 at DNA damage sites. | 0.702 |
| M0R6B6_RAT | Uba52 | ENSRNOP00000064963 | ENSRNOP00000027073 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] | 0.724 |
| M0R6B6_RAT | Uba6 | ENSRNOP00000064963 | ENSRNOP00000030667 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Similar to RIKEN cDNA 5730469D23 (Predicted). | 0.673 |
| M0R6B6_RAT | Ube2h | ENSRNOP00000064963 | ENSRNOP00000064341 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-conjugating enzyme E2H; Belongs to the ubiquitin-conjugating enzyme family. | 0.652 |
| M0R6B6_RAT | Ube2j2 | ENSRNOP00000064963 | ENSRNOP00000074553 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Similar to Ubc6p homolog, isoform CRA_a. | 0.732 |
| M0R6B6_RAT | Ube2v1 | ENSRNOP00000064963 | ENSRNOP00000036667 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-conjugating enzyme E2 V1. | 0.849 |
| M0R6B6_RAT | Ube2v2 | ENSRNOP00000064963 | ENSRNOP00000062102 | UBIQUITIN_CONJUGAT_2 domain-containing protein. | Ubiquitin-conjugating enzyme E2 variant 2; Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly- ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage; Belongs to the ubiquitin-conjugating enzym [...] | 0.783 |
| Trip12 | Fancl | ENSRNOP00000068991 | ENSRNOP00000036801 | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | FA complementation group L. | 0.546 |
| Trip12 | M0R6B6_RAT | ENSRNOP00000068991 | ENSRNOP00000064963 | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | UBIQUITIN_CONJUGAT_2 domain-containing protein. | 0.806 |
| Trip12 | Uba1 | ENSRNOP00000068991 | ENSRNOP00000033950 | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | Ubiquitin-like modifier-activating enzyme 1; Catalyzes the first step in ubiquitin conjugation to mark cellular proteins for degradation through the ubiquitin-proteasome system. Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding a ubiquitin-E1 thioester and free AMP. Essential for the formation of radiation-induced foci, timely DNA repair and for response to replication stress. Promotes the recruitment of TP53BP1 and BRCA1 at DNA damage sites. | 0.569 |
| Trip12 | Uba6 | ENSRNOP00000068991 | ENSRNOP00000030667 | E3 ubiquitin-protein ligase TRIP12; E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spr [...] | Similar to RIKEN cDNA 5730469D23 (Predicted). | 0.541 |
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