STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC690507Vomeromodulin. (555 aa)    
Predicted Functional Partners:
Bpifa6
BPI fold-containing family A, member 6.
      
 0.777
Bpifa5
BPI fold-containing family A, member 5.
   
  
 0.753
LOC100362409
Odorant-binding protein; This protein is found in nasal epithelium and it binds a wide variety of chemical odorants.
      
 0.730
Olr300
Olfactory receptor 300.
      
 0.730
Obp1f
Odorant-binding protein; Belongs to the calycin superfamily. Lipocalin family.
      
 0.718
Vom2r43
Vomeronasal 2 receptor, 43.
      
 0.694
Vom2r-ps1
G_PROTEIN_RECEP_F3_4 domain-containing protein.
      
 0.694
Bbof1
Basal body orientation factor 1.
      
 0.673
LOC103690319
Odorant-binding protein 1F; Belongs to the calycin superfamily. Lipocalin family.
      
 0.665
LOC100359989
Allergen Fel d 4-like; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.663
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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