Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Perm1Uncharacterized protein. (725 aa)    
Predicted Functional Partners:
TTC16
Tetratricopeptide repeat domain 16.
    
 0.802
TMEM201
Transmembrane protein 201.
    
 
 0.676
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
    
 
 0.654
NDUFAF7
Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
      
 0.612
RNF141
Ring finger protein 141.
    
 
 0.609
KLHL17
Kelch like family member 17.
    
 
 0.592
MDH1B
Malate dehydrogenase 1B.
    
 
 0.591
KLHL31
Kelch like family member 31.
   
 
 0.562
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.562
MRVI1
Murine retrovirus integration site 1 homolog.
    
 0.556
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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