STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rdm1RRM domain-containing protein. (287 aa)    
Predicted Functional Partners:
PI4KB
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
   0.739
CD79B
CD79b molecule.
      
 0.699
RAD52
RAD52 homolog, DNA repair protein.
    
 
 0.672
ARHGAP27
Rho GTPase activating protein 27.
      
 0.652
DNAJC12
DnaJ heat shock protein family (Hsp40) member C12.
      
 0.642
AGA
Aspartylglucosaminidase.
      
 0.618
FAM111A
Family with sequence similarity 111 member A.
      
 0.612
FREM2
FRAS1 related extracellular matrix 2.
      
 0.597
KRT75
Keratin 75; Belongs to the intermediate filament family.
      
 0.595
CMYA5
Cardiomyopathy associated 5.
      
 0.582
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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