STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D2BTBC1 domain family member 2B. (947 aa)    
Predicted Functional Partners:
RAB7A
RAB7A, member RAS oncogene family.
    
 0.815
WDR90
WD repeat domain 90.
    
   0.798
Neurl4
Neuralized E3 ubiquitin protein ligase 4.
      
 0.769
RAB31
RAB31, member RAS oncogene family.
    
 0.703
RAB9A
RAB9A, member RAS oncogene family.
    
 0.639
EFHB
EF-hand domain family member B.
   
   0.618
C1orf158
Chromosome 1 open reading frame 158.
    
   0.617
C9orf135
Chromosome 9 open reading frame 135.
    
   0.617
ENKUR
Enkurin, TRPC channel interacting protein.
    
   0.617
RAB22A
RAB22A, member RAS oncogene family.
    
 0.610
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.