STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCHD1Structural maintenance of chromosomes flexible hinge domain containing 1. (1945 aa)    
Predicted Functional Partners:
MVB12A
Multivesicular body subunit 12A.
    
   0.922
METTL4
Methyltransferase like 4; Belongs to the MT-A70-like family.
   
  
 0.899
NUDCD1
NudC domain containing 1.
    
   0.896
MACROH2A2
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 
 0.874
ENSCPOP00000029916
Uncharacterized protein.
    
 
 0.833
NARS2
Asparaginyl-tRNA synthetase 2, mitochondrial.
    
   0.798
EMILIN2
Elastin microfibril interfacer 2.
 
    
 0.789
PDS5A
PDS5 cohesin associated factor A.
   
  
 0.786
WARS1
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.771
TSG101
Tumor susceptibility 101.
    
   0.769
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.