Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APCDD1 | CASK | ENSCPOP00000001539 | ENSCPOP00000009747 | APC down-regulated 1. | Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family. | 0.655 |
APCDD1 | CDSN | ENSCPOP00000001539 | ENSCPOP00000020475 | APC down-regulated 1. | Corneodesmosin. | 0.741 |
APCDD1 | CYB5R4 | ENSCPOP00000001539 | ENSCPOP00000000045 | APC down-regulated 1. | Cytochrome b5 reductase 4. | 0.700 |
APCDD1 | DSG4 | ENSCPOP00000001539 | ENSCPOP00000004850 | APC down-regulated 1. | Desmoglein 4; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. | 0.749 |
APCDD1 | Eps8l3 | ENSCPOP00000001539 | ENSCPOP00000012478 | APC down-regulated 1. | PTB domain-containing protein. | 0.667 |
APCDD1 | LPAR6 | ENSCPOP00000001539 | ENSCPOP00000032300 | APC down-regulated 1. | Lysophosphatidic acid receptor 6; Belongs to the G-protein coupled receptor 1 family. | 0.742 |
APCDD1 | LRP5 | ENSCPOP00000001539 | ENSCPOP00000007301 | APC down-regulated 1. | Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family. | 0.655 |
APCDD1 | SNRPE | ENSCPOP00000001539 | ENSCPOP00000021581 | APC down-regulated 1. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. | 0.629 |
APCDD1 | UTP20 | ENSCPOP00000001539 | ENSCPOP00000002835 | APC down-regulated 1. | UTP20 small subunit processome component. | 0.634 |
APCDD1 | WDR43 | ENSCPOP00000001539 | ENSCPOP00000009750 | APC down-regulated 1. | WD repeat domain 43. | 0.619 |
CASK | APCDD1 | ENSCPOP00000009747 | ENSCPOP00000001539 | Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family. | APC down-regulated 1. | 0.655 |
CASK | Eps8l3 | ENSCPOP00000009747 | ENSCPOP00000012478 | Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family. | PTB domain-containing protein. | 0.850 |
CDSN | APCDD1 | ENSCPOP00000020475 | ENSCPOP00000001539 | Corneodesmosin. | APC down-regulated 1. | 0.741 |
CDSN | DSG4 | ENSCPOP00000020475 | ENSCPOP00000004850 | Corneodesmosin. | Desmoglein 4; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. | 0.534 |
CDSN | Eps8l3 | ENSCPOP00000020475 | ENSCPOP00000012478 | Corneodesmosin. | PTB domain-containing protein. | 0.625 |
CDSN | LPAR6 | ENSCPOP00000020475 | ENSCPOP00000032300 | Corneodesmosin. | Lysophosphatidic acid receptor 6; Belongs to the G-protein coupled receptor 1 family. | 0.753 |
CDSN | SNRPE | ENSCPOP00000020475 | ENSCPOP00000021581 | Corneodesmosin. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. | 0.614 |
CYB5R4 | APCDD1 | ENSCPOP00000000045 | ENSCPOP00000001539 | Cytochrome b5 reductase 4. | APC down-regulated 1. | 0.700 |
DSG4 | APCDD1 | ENSCPOP00000004850 | ENSCPOP00000001539 | Desmoglein 4; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. | APC down-regulated 1. | 0.749 |
DSG4 | CDSN | ENSCPOP00000004850 | ENSCPOP00000020475 | Desmoglein 4; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. | Corneodesmosin. | 0.534 |
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