STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C15orf40Chromosome 15 open reading frame 40. (126 aa)    
Predicted Functional Partners:
CLIC2
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
    
   0.870
FBXO47
F-box protein 47.
   
    0.721
FAM210A
Family with sequence similarity 210 member A.
   
  
 0.569
PROSER2
Proline and serine rich 2.
      
 0.555
Ahsa2p
Aha1_N domain-containing protein.
      
 0.553
NIPAL1
NIPA like domain containing 1.
      
 0.544
SLC35E3
Solute carrier family 35 member E3.
   
    0.498
LMBR1
Limb development membrane protein 1; Belongs to the LIMR family.
      
 0.459
SMG9
SMG9 nonsense mediated mRNA decay factor.
      
 0.458
Slc37a3
MFS domain-containing protein.
      
 0.458
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.