Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Chmp3Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
CHMP6
Charged multivesicular body protein 6.
   
 0.999
CHMP2A
Charged multivesicular body protein 2A.
   
0.997
CHMP4B
Charged multivesicular body protein 4B.
   
 0.995
CHMP2B
Charged multivesicular body protein 2B.
   
0.994
CHMP7
Charged multivesicular body protein 7.
   
 0.993
Vps4a
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.993
CHMP5
Charged multivesicular body protein 5.
   
 0.992
IST1
IST1 factor associated with ESCRT-III.
    
 0.985
STAMBP
STAM binding protein.
    
 
 0.985
CHMP4C
Charged multivesicular body protein 4C.
   
 0.985
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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