Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AVL9AVL9 cell migration associated. (620 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.895
RAB30
RAB30, member RAS oncogene family.
      
 0.888
RAB33B
RAB33B, member RAS oncogene family.
      
 0.837
DENND11
DENN domain containing 11.
      
 0.813
DENND10
DENN domain containing 10.
      
 0.806
DENND6A
DENN domain containing 6A.
      
 0.769
RAB33A
RAB33A, member RAS oncogene family.
      
 0.711
DENND2A
DENN domain containing 2A.
      
 0.651
DENND1C
DENN domain containing 1C.
      
 0.650
DENND4B
DENN domain containing 4B.
      
 0.637
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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