STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H0UYD0_CAVPOCalpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (727 aa)    
Predicted Functional Partners:
H0V7Z8_CAVPO
Uncharacterized protein.
    
 0.726
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.643
HEG1
Heart development protein with EGF like domains 1.
    
 
 0.627
GCA
Grancalcin.
   
 0.596
PEF1
Penta-EF-hand domain containing 1.
   
 0.596
NGB
Neuroglobin; Belongs to the globin family.
   
  
 0.596
SRI
Sorcin.
   
 0.596
PDCD6
Programmed cell death 6.
   
 0.596
CAPNS1
Calpain small subunit 1.
   
 0.596
CYGB
Cytoglobin; Belongs to the globin family.
   
  
 0.596
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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