STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLK4CDC like kinase 4; Belongs to the protein kinase superfamily. (481 aa)    
Predicted Functional Partners:
CLK1
CDC like kinase 1; Belongs to the protein kinase superfamily.
  
 
 
0.906
Srsf1
Uncharacterized protein.
    
 
 0.687
SRPK2
SRSF protein kinase 2.
    
 
0.629
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.591
IRX1
Iroquois homeobox 1.
   
  
 0.582
SRPK1
SRSF protein kinase 1.
    
 
0.564
SRPK3
SRSF protein kinase 3.
    
 
0.564
CLK2
CDC like kinase 2; Belongs to the protein kinase superfamily.
  
 
  
0.548
TRA2B
Transformer 2 beta homolog.
   
 
 0.542
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.541
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.