YPEL3 protein (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACVR2A	ATP1B2	ENSCPOP00000007705	ENSCPOP00000024707	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	0.612
ACVR2A	HNRNPD	ENSCPOP00000007705	ENSCPOP00000026748	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Heterogeneous nuclear ribonucleoprotein D.	0.604
ACVR2A	HOXB6	ENSCPOP00000007705	ENSCPOP00000022187	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Homeobox B6.	0.634
ACVR2A	ITM2B	ENSCPOP00000007705	ENSCPOP00000027761	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Integral membrane protein 2B.	0.659
ACVR2A	YPEL3	ENSCPOP00000007705	ENSCPOP00000024097	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Protein yippee-like; Belongs to the yippee family.	0.697
ARMC8	GID8	ENSCPOP00000007287	ENSCPOP00000007101	Armadillo repeat containing 8.	GID complex subunit 8 homolog.	0.994
ARMC8	RANBP10	ENSCPOP00000007287	ENSCPOP00000022722	Armadillo repeat containing 8.	RAN binding protein 10.	0.995
ARMC8	RANBP9	ENSCPOP00000007287	ENSCPOP00000010552	Armadillo repeat containing 8.	RAN binding protein 9.	0.990
ARMC8	WDR26	ENSCPOP00000007287	ENSCPOP00000006596	Armadillo repeat containing 8.	WD repeat domain 26.	0.997
ARMC8	YPEL3	ENSCPOP00000007287	ENSCPOP00000024097	Armadillo repeat containing 8.	Protein yippee-like; Belongs to the yippee family.	0.786
ATP1B2	ACVR2A	ENSCPOP00000024707	ENSCPOP00000007705	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.612
ATP1B2	HNRNPD	ENSCPOP00000024707	ENSCPOP00000026748	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Heterogeneous nuclear ribonucleoprotein D.	0.635
ATP1B2	HOXB6	ENSCPOP00000024707	ENSCPOP00000022187	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Homeobox B6.	0.637
ATP1B2	ITM2B	ENSCPOP00000024707	ENSCPOP00000027761	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Integral membrane protein 2B.	0.765
ATP1B2	YPEL3	ENSCPOP00000024707	ENSCPOP00000024097	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	Protein yippee-like; Belongs to the yippee family.	0.678
GID8	ARMC8	ENSCPOP00000007101	ENSCPOP00000007287	GID complex subunit 8 homolog.	Armadillo repeat containing 8.	0.994
GID8	RANBP10	ENSCPOP00000007101	ENSCPOP00000022722	GID complex subunit 8 homolog.	RAN binding protein 10.	0.995
GID8	RANBP9	ENSCPOP00000007101	ENSCPOP00000010552	GID complex subunit 8 homolog.	RAN binding protein 9.	0.997
GID8	WDR26	ENSCPOP00000007101	ENSCPOP00000006596	GID complex subunit 8 homolog.	WD repeat domain 26.	0.999
GID8	YPEL3	ENSCPOP00000007101	ENSCPOP00000024097	GID complex subunit 8 homolog.	Protein yippee-like; Belongs to the yippee family.	0.786