STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRM4Serine/arginine repetitive matrix 4. (608 aa)    
Predicted Functional Partners:
PTBP2
Polypyrimidine tract binding protein 2.
      
 0.703
MEX3B
Mex-3 RNA binding family member B.
    
 0.683
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.664
TMC1
Transmembrane channel-like protein.
    
 0.663
SLC19A2
Solute carrier family 19 member 2.
      
 0.615
KCNQ4
Potassium voltage-gated channel subfamily Q member 4; Belongs to the potassium channel family.
   
 
 0.589
SLC17A8
Solute carrier family 17 member 8.
   
  
 0.588
DAAM1
Dishevelled associated activator of morphogenesis 1.
    
 
 0.585
ESPL1
Extra spindle pole bodies like 1, separase.
    
 0.573
WFS1
Wolframin ER transmembrane glycoprotein.
      
 0.571
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.