STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps4aUncharacterized protein; Belongs to the AAA ATPase family. (437 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
   
 0.996
CHMP2A
Charged multivesicular body protein 2A.
    
 0.995
CHMP6
Charged multivesicular body protein 6.
    
 0.991
CHMP1A
Charged multivesicular body protein 1A.
   
 0.989
LOC100735003
Uncharacterized protein.
   
 0.989
IST1
IST1 factor associated with ESCRT-III.
   
 0.979
CHMP4C
Charged multivesicular body protein 4C.
    
 0.977
CHMP2B
Charged multivesicular body protein 2B.
   
 0.975
CHMP4B
Charged multivesicular body protein 4B.
    
 0.975
Tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.970
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.