STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM13CFamily with sequence similarity 13 member C. (580 aa)    
Predicted Functional Partners:
DDX46
DEAD-box helicase 46.
    
 
 0.582
RDH14
Retinol dehydrogenase 14; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.562
PPP2R3A
Protein phosphatase 2 regulatory subunit B''alpha.
      
 0.554
CDC42
Cell division cycle 42.
    
 0.532
RHOC
Ras homolog family member C.
    
 0.473
RND1
Rho family GTPase 1.
    
 0.473
RND3
Rho family GTPase 3.
    
 0.473
RHOA
Ras homolog family member A.
    
 0.473
RHOF
Ras homolog family member F, filopodia associated.
    
 0.468
CPXM2
Carboxypeptidase X, M14 family member 2.
      
 0.463
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.